Comment by bsder
A lot of the hypotheses about Long <insert virus here> are about how well your body cleared the remnants. You can have a persistent reservoir of something for quite a long time until your body finally decides to clear it out.
One of the canonical examples of this are warts from HPV. There are documented cases of people having persistent infections until they "injured" a wart somehow, their body finally took notice, and then their body proceeded to completely clear all of them.
Modern medicine really does not deal with active viruses or their aftermath very well.
That's really interesting. I wonder if the immune system is modal - I know there are tons of systems in place that kick it into gear for response to an infection, so I guess its reasonable to assume that the body prefers to keep it as dormant as possible the rest of the time to minimise auotimmune disease risks and the like.
If these sorts of disorders creep in underneath it, and persist at a sufficiently low level not to trigger it, I suppose these things can hang around. I wonder why the immune system can't clear it out otherwise though (since presumable plenty of other immune systems have to always be active, to prevent infections from cuts and the like from being imminently fatal..)